PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483854.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 313aa    MW: 33949.6 Da    PI: 7.5525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012134156123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_016483854.1 134 YECKTCNRTFPSFQALGGHRTSH 156
                     99*********999998888777 PP

2zf-C2H213.70.00019213235123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_016483854.1 213 HECSICGAEFSSGQALGGHMRRH 235
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-12133158IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-9133156No hitNo description
SMARTSM003550.059134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-9208235No hitNo description
PROSITE profilePS501579.827213240IPR007087Zinc finger, C2H2
SMARTSM003550.01213235IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-13213237IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEFSEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGAGGGSD DIGGGGEFYS  60
STVQYSPTTS STQISTSSEE DEDMANCLIL LAQSGRCQKL QVESTERKMV KISSRKFTEM  120
ATSTTGGKAG FYVYECKTCN RTFPSFQALG GHRTSHKKAK TIVEEKKSTA DSENHDRQYL  180
QEEEKLNKII TPTQIVNKGN YSHGNLNSKP KIHECSICGA EFSSGQALGG HMRRHRPPPT  240
ITATNSTKVT DETTSESSHD DGDSNKEKPR IILSLDLNLP APPEDDHRDS KFGFSANKQS  300
LVFSAAALVD CHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-91HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483854.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0V0HVK21e-136A0A0V0HVK2_SOLCH; Putative zinc finger protein ZAT5-like
STRINGPGSC0003DMT4000184571e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-57C2H2 family protein